SNP Profiles matching MAR 9

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 Key

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_Input profile
TTTTAACCGGAACCTTGGTTAAGGTTCC
1._MAR_1
TTTTAACCGGAACCTTGGTTAAGGTTCC
2._MAR_10
TTTTAACCGGAACCTTGGTTAAGGTTCC
3._MAR_13
TTTTAACCGGAACCTTGGTTAAGGTTCC
4._MAR_14
TTTTAACCGGAACCTTGGTTAAGGTTCC
5._MAR_21
TTTTAACCGGAACCTTGGTTAAGGTTCC
6._MAR_22
TTTTAACCGGAACCTTGGTTAAGGTTCC
7._MAR_1
TTTTAACCGGAACCTTGGTTAA-TTCC
8._MAR_20
TTTTAACCGGAACCTTGGTTAA-TTCC
9._RUQ_678
_TTAACC_AACCTTGGTT_GG_CC
10._RUQ_557
_TTAACC_AACCTTGGTT_GG_CC
11._MAR_11
TTTTAACCGGAACCTTCCTTAAGGTTCC
12._MAR_12
TTTTAACCGGAACCTTCCTTAAGGTTCC
13._MAR_17
TTTTAACCGGAACCTTCCTTAAGGTTCC
14._RUQ_554
_TTAACC_AACCTTGGCC_GG_CC
15._RUQ_648
_TTAACC_AACCTTGGCC_GG_CC
16._MARPER_22
TTGTAACCGGAACCTTCCTTAAGGTTCC
17._AMAZ_5_/2
TTTTAACCGGAACCTTCCTTAAGG_CC
18._DOM_1
ATTTAACCAGAACCTTGGTTAAGG_CC
19._PA_167_[PER]
TTGTAACCGGAGCCTTCGTTAA-TTCC
20._LCT_EEN_90_/S-7
TTTTAACCGGAACCTTCCTTAAGGTTCC
21._BE_10
TTTTAA_GGAA_TTCCTTAAGG_CC
22._SIAL_70
TTTTAACCGGAACCTTCCTTAAGG_CC
23._JA_9_/37_[POU]
TTTTAGCCGGAACCTTCCCTAAGG_CC
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_Input profile
GGAATTAAAAAACCCCAACCGGAATTX_X
1._MAR_1
GGAATTAAAAAACCCCAACCGGAATTX_X
2._MAR_10
GGAATTAAAAAACCCCAACCGGAATTX_X
3._MAR_13
GGAATTAAAAAACCCCAACCGGAATTX_X
4._MAR_14
GGAATTAAAAAACCCCAACCGGAATTX_X
5._MAR_21
GGAATTAAAAAACCCCAACCGGAATTX_X
6._MAR_22
GGAATTAAAAAACCCCAACCGGAATTX_X
7._MAR_1
GGAATTAAAAAACCCCAACCGGAATTX_X
8._MAR_20
GGAATTAAAAAACCCCAACCGGAATTX_X
9._RUQ_678
___AA_____CCGGAA_X_X
10._RUQ_557
___AA_____CCGGAA_X_X
11._MAR_11
GGAATTAAAAAACCCCAACCGGAATTX_X
12._MAR_12
GGAATTAAAAAACCCCAACCGGAATTX_X
13._MAR_17
GGAATTAAAAAACCCCAACCGGAATTX_X
14._RUQ_554
___AA_____CCGGAA_X_X
15._RUQ_648
___AA_____CCGGAA_X_X
16._MARPER_22
GGAATTAAAAAACCCCAACCGGAACTX_X
17._AMAZ_5_/2
GGAATTGGAAAACCCCAACCGGAATTX_X
18._DOM_1
GGAATTAGAAAACCCCAACCGGAGTTX_X
19._PA_167_[PER]
GGAATTAGAAAACCCCAACCGGAATTX_X
20._LCT_EEN_90_/S-7
GGAATTGGAAAACC-AACCGGAA-X_X
21._BE_10
_AATTGGAAAACCCC_CCGGAATTX_X
22._SIAL_70
GGAATTGGAAAACCCCAACCGGAGTTX_X
23._JA_9_/37_[POU]
GGAATTAGAAAACCCCAACCGGAATTX_X

Input profile: MAR_9

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B220 T3
 Dapeng Zhang, 2014

1._MAR_1

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_10

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B243 T1
 Dapeng Zhang, 2014

3._MAR_13

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B189 T1
 Dapeng Zhang, 2014

4._MAR_14

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B207 T1
 Dapeng Zhang, 2014

5._MAR_21

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B267 T2
 Dapeng Zhang, 2014

6._MAR_22

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B190 T1
 Dapeng Zhang, 2014

7._MAR_1

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

8._MAR_20

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

9._LCT_EEN_62_/S-4 RUQ_678

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._MAR_9 RUQ_557

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._MAR_11

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B252 T2
 Dapeng Zhang, 2014

12._MAR_12

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B268 T2
 Dapeng Zhang, 2014

13._MAR_17

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B221 T1
 Dapeng Zhang, 2014

14._GDL_7 RUQ_554

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._GF_32 RUQ_648

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._MARPER_22

92.6 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 475
 Dapeng Zhang, 2014

17._AMAZ_5_/2

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

18._DOM_1

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B191 T2
 Dapeng Zhang, 2016

19._PA_167_[PER]

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 736
 Dapeng Zhang, 2014

20._LCT_EEN_90_/S-7

92 %
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

21._BE_10

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

22._SIAL_70

90.4 %
26 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._JA_9_/37_[POU]

90.4 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520